Publications – old

Gross, F. (2023). Do Single-cell Experiments Challenge the Concept of Cell Type? Organisms. Journal of Biological Sciences, 6(2). https://doi.org/10.13133/2532-5876/18131

Horwitz, A. V., & Wakefield, J. C. (2023). Two Sides of Depression: Medical & Social. Daedalus, 152(4), 212–227. https://doi.org/10.1162/daed_a_02039

Hazelwood, C. (2023). An Emerging Dilemma for Reciprocal Causation. Philosophy of Science, 1–43. https://doi.org/10.1017/psa.2023.124

Zach, M. (2023). On the Relationship between Asymptomatic Infections and Diseases. Philosophy of Medicine, 4(1). https://doi.org/10.5195/pom.2023.171

Kostić, D., & Halffman, W. (2023). Mapping explanatory language in neuroscience. Synthese, 202(4), 112. https://doi.org/10.1007/s11229-023-04329-6

Zheng, Q., & Daskalov, A. (2023). Microbial gasdermins: More than a billion years of pyroptotic-like cell death. Seminars in Immunology, 69, 101813. https://doi.org/10.1016/j.smim.2023.101813

Dooren, T. van, Price, C. J., Banks, P. B., Berger-Tal, O., Chrulew, M., Johnson, J., Lajeunesse, G., Lynch, K. E., McArthur, C., Parker, F. C. G., Oakey, M., Pitcher, B. J., Clair, C. C. S., Ward-Fear, G., Widin, S., Wong, B. B. M., & Blumstein, D. T. (2023). The ethics of intervening in animal behaviour for conservation. Trends in Ecology & Evolution, 38(9), 822–830. https://doi.org/10.1016/j.tree.2023.04.011

DiFrisco, J., Wagner, G. P., & Love, A. C. (2023). Reframing research on evolutionary novelty and co-option: Character identity mechanisms versus deep homology. Seminars in Cell & Developmental Biology, 145, 3–12. https://doi.org/10.1016/j.semcdb.2022.03.030

Gilbert, S. F. (2023). Shells, Gills, and GonadsOn the Remarkable Persistence of Oysters in the Chesapeake Bay. Historical Studies in the Natural Sciences, 53(3), 221–241. https://doi.org/10.1525/hsns.2023.53.3.221

Daly, T. (2023). Philosophers of Medicine Should Write More Letters for Medical Journals. Philosophy of Medicine, 4, 1–3. https://doi.org/10.5195/pom.2023.161

Pavani, M., Chiroli, E., Cancrini, C., Gross, F., Bonaiuti, P., Villa, S., Giavazzi, F., Matafora, V., Bachi, A., Fava, L. L., Lischetti, T., & Ciliberto, A. (2023). Triap1 upregulation promotes escape from mitotic-slippage-induced G1 arrest. Cell Reports, 42(3). https://doi.org/10.1016/j.celrep.2023.112215

Carrieri, D., Peccatori, F. A., & Boniolo, G. (2023). The Oncohumanities training programme: Fostering a deeper engagement and integration of oncology and humanities to tackle the pressing and complex challenges of cancer care. https://doi.org/10.1177/03008916231158674

Kagan, B. J., Razi, A., Bhat, A., Kitchen, A. C., Tran, N. T., Habibollahi, F., Khajehnejad, M., Parker, B. J., Rollo, B., & Friston, K. J. (2023). Scientific communication and the semantics of sentience. Neuron, 111(5), 606–607. https://doi.org/10.1016/j.neuron.2023.02.008

Balci, F., Hamed, S. B., Boraud, T., Bouret, S., Brochier, T., Brun, C., Cohen, J. Y., Coutureau, E., Deffains, M., Doyère, V., Gregoriou, G. G., Heimel, J. A., Kilavik, B. E., Lee, D., Leuthardt, E. C., Mainen, Z. F., Mathis, M., Monosov, I. E., Naudé, J., … Zimmermann, J. (2023). A response to claims of emergent intelligence and sentience in a dish. Neuron, 111(5), 604–605. https://doi.org/10.1016/j.neuron.2023.02.009

Levenstein, D., Alvarez, V. A., Amarasingham, A., Azab, H., Chen, Z. S., Gerkin, R. C., Hasenstaub, A., Iyer, R., Jolivet, R. B., Marzen, S., Monaco, J. D., Prinz, A. A., Quraishi, S., Santamaria, F., Shivkumar, S., Singh, M. F., Traub, R., Nadim, F., Rotstein, H. G., & Redish, A. D. (2023). On the Role of Theory and Modeling in Neuroscience. Journal of Neuroscience, 43(7), 1074–1088. https://doi.org/10.1523/JNEUROSCI.1179-22.2022

Zach, M., & Greslehner, G. P. (2023). Understanding immunity: an alternative framework beyond defense and strength. Biology & Philosophy, 38(1), 7. https://doi.org/10.1007/s10539-023-09893-2

Williamson, H. F., & Leonelli, S. (Eds.). (2023). Towards Responsible Plant Data Linkage: Data Challenges for Agricultural Research and Development. Springer International Publishing. https://doi.org/10.1007/978-3-031-13276-6

Du Crest, A., Valković, M., Ariew, A., Desmond, H., Huneman, P., & Reydon, T. A. C. (Eds.). (2023). Evolutionary Thinking Across Disciplines: Problems and Perspectives in Generalized Darwinism (Vol. 478). Springer International Publishing. https://doi.org/10.1007/978-3-031-33358-3

Hazelwood, C. (2023). Reciprocal Causation and Biological Practice. http://philsci-archive.pitt.edu/21685/

DiFrisco, J., Love, A. C., & Wagner, G. P. (2023). The hierarchical basis of serial homology and evolutionary novelty. Journal of Morphology, 284(1), e21531. https://doi.org/10.1002/jmor.21531

Huneman, P. (2023). Death: Perspectives from the Philosophy of Biology. Springer International Publishing. https://doi.org/10.1007/978-3-031-14417-2

Wakefield, J. C. (2023). The promise of evolutionary psychiatry. World Psychiatry, 22(2), 173–174. https://doi.org/10.1002/wps.21070

Méthot, P.-O. (Ed.). (2023). Philosophy, History and Biology: Essays in Honour of Jean Gayon (Vol. 30). Springer International Publishing. https://doi.org/10.1007/978-3-031-28157-0

Pradeu, T., Daignan-Fornier, B., Ewald, A., Germain, P.-L., Okasha, S., Plutynski, A., Benzekry, S., Bertolaso, M., Bissell, M., Brown, J. S., Chin-Yee, B., Chin-Yee, I., Clevers, H., Cognet, L., Darrason, M., Farge, E., Feunteun, J., Galon, J., Giroux, E., … Laplane, L. (2023). Reuniting philosophy and science to advance cancer research. Biological Reviews, 98(5), 1668–1686. https://doi.org/10.1111/brv.12971

Bourrat, P., Godsoe, W., Pillai, P., Gouhier, T. C., Ulrich, W., Gotelli, N. J., & van Veelen, M. (2023). What is the price of using the Price equation in ecology? Oikos, 2023(8), e10024. https://doi.org/10.1111/oik.10024

Clarke, B. (2022). “Margulis, Autopoiesis, and Sympoiesis.” In Symbionts: Contemporary Artists and the Biosphere (pp. 63–77). MIT Press. https://scholars.ttu.edu/en/publications/margulis-autopoiesis-and-sympoiesis

Leonelli, S. (2022). Process-Sensitive Naming: Trait Descriptors and the Shifting Semantics of Plant (Data) Science. Philosophy, Theory, and Practice in Biology, 14. https://doi.org/10.3998/ptpbio.3364

Gilbert, S. (2022). Pseudo-embryology and Personhood: How embryological pseudoscience helps structure the American abortion debate. https://doi.org/10.22541/au.166597742.26436901/v1

Williamson, H. F., & Leonelli, S. (2022). Accelerating agriculture: Data-intensive plant breeding and the use of genetic gain as an indicator for agricultural research and development. Studies in History and Philosophy of Science, 95, 167–176. https://doi.org/10.1016/j.shpsa.2022.08.006

Wakefield, J. C. (2022). Freud’s Argument for the Oedipus Complex: A Philosophy of Science Analysis of the Case of Little Hans. Routledge. https://doi.org/10.4324/9781003272472

Barack, D. L., Miller, E. K., Moore, C. I., Packer, A. M., Pessoa, L., Ross, L. N., & Rust, N. C. (2022). A call for more clarity around causality in neuroscience. Trends in Neurosciences, 45(9), 654–655. https://doi.org/10.1016/j.tins.2022.06.003

Calvo, P., & Lawrence, N. (2022). Planta Sapiens: Unmasking Plant Intelligence. Hachette UK.

Gilbert, S. F., & Hadfield, M. G. (2022). Symbiosis of disciplines: how can developmental biologists join conservationists in sustaining and restoring earth’s biodiversity? Development, 149(13), dev199960. https://doi.org/10.1242/dev.199960

Torri, A., Jaeger, J., Pradeu, T., & Saleh, M.-C. (2022). The origin of RNA interference: Adaptive or neutral evolution? PLOS Biology, 20(6), e3001715. https://doi.org/10.1371/journal.pbio.3001715

Ratti, E., & Germain, P.-L. (2022). A relic of design: against proper functions in biology. Biology & Philosophy, 37(4), 27. https://doi.org/10.1007/s10539-022-09856-z

Zach, M. (2022). A Complementary Account of Scientific Modelling: Modelling Mechanisms in Cancer Immunology. The British Journal for the Philosophy of Science. https://doi.org/10.1086/721530

Solomon, M., Foderà, V., Langkilde, A. E., Elliott, P., Tagliavini, F., Forsyth, T., Klementieva, O., & Bellotti, V. (2022). Recommendations for addressing the translational gap between experimental and clinical research on amyloid diseases. Journal of Translational Medicine, 20(1), 213. https://doi.org/10.1186/s12967-022-03420-9

Love, A. C., Grabowski, M., Houle, D., Liow, L. H., Porto, A., Tsuboi, M., Voje, K. L., & Hunt, G. (2022). Evolvability in the fossil record. Paleobiology, 48(2), 186–209. https://doi.org/10.1017/pab.2021.36

Sepich-Poore, G. D., Guccione, C., Laplane, L., Pradeu, T., Curtius, K., & Knight, R. (2022). Cancer’s second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution: Humans and their tumors are not aseptic, and the multispecies nature of cancer modulates clinical care and clonal evolution. BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology, 44(5), e2100252. https://doi.org/10.1002/bies.202100252

Alexa, A., Sok, P., Gross, F., Albert, K., Kobori, E., Póti, Á. L., Gógl, G., Bento, I., Kuang, E., Taylor, S. S., Zhu, F., Ciliberto, A., & Reményi, A. (2022). A non-catalytic herpesviral protein reconfigures ERK-RSK signaling by targeting kinase docking systems in the host. Nature Communications, 13(1), 472. https://doi.org/10.1038/s41467-022-28109-x

Khalifa, K., Islam, F., Gamboa, J. P., Wilkenfeld, D. A., & Kostić, D. (2022). Integrating Philosophy of Understanding With the Cognitive Sciences. Frontiers in Systems Neuroscience, 16. https://www.frontiersin.org/articles/10.3389/fnsys.2022.764708

Pavličev, M., & Wagner, G. P. (2022). The value of broad taxonomic comparisons in evolutionary medicine: Disease is not a trait but a state of a trait! MedComm, 3(4), e174. https://doi.org/10.1002/mco2.174

Solomon, M. (2022). A Pragmatic Approach to Diagnostic Categorization. In M. D. Lockshin, M. K. Crow, & M. Barbhaiya (Eds.), Diagnoses Without Names: Challenges for Medical Care, Research, and Policy (pp. 11–17). Springer International Publishing. https://doi.org/10.1007/978-3-031-04935-4_2

Daëron, M. (2022). The immune system as a system of relations. Frontiers in Immunology, 13. https://www.frontiersin.org/articles/10.3389/fimmu.2022.984678

Barwich, A.-S., & Lloyd, E. A. (2022). More than meets the AI: The possibilities and limits of machine learning in olfaction. Frontiers in Neuroscience, 16. https://www.frontiersin.org/articles/10.3389/fnins.2022.981294

Barwich, A.-S., & Smith, B. C. (2022). From Molecules to Perception: Philosophical Investigations of Smell. Philosophy Compass, 17(11), e12883. https://doi.org/10.1111/phc3.12883

André, J.-B., Cozic, M., De Monte, S., Gayon, J., Huneman, P., Martens, J., & Walliser, B. (2022). From Evolutionary Biology to Economics and Back: Parallels and Crossings between Economics and Evolution (Vol. 28). Springer International Publishing. https://doi.org/10.1007/978-3-031-08790-5

Bickle, J., Craver, C. F., & Barwich, A.-S. (2021). The Tools of Neuroscience Experiment: Philosophical and Scientific Perspectives. Routledge.

Khelfaoui, M., Gingras, Y., Lemoine, M., & Pradeu, T. (2021). The visibility of philosophy of science in the sciences, 1980–2018. Synthese, 199(3), 6219–6249. https://doi.org/10.1007/s11229-021-03067-x

Kostić, D., & Khalifa, K. (2021). The directionality of topological explanations. Synthese, 199(5), 14143–14165. https://doi.org/10.1007/s11229-021-03414-y